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EARLY EARTH
Jurassic fossil suggests early mammal ancestors swallowed like modern mammals
by Brooks Hays
Washington (UPI) Jul 18, 2019

Study details differences in gene expression among male, female mammals
Washington (UPI) Jul 19, 2019 -Most of the science looking at gender differences among mammals have focused on physiological differences, but new research suggests many of those more outward-facing differences -- like height and facial hair -- are rooted in differences in the way males and females express their genes.

A new survey of mammalian RNA revealed genome-wide variations in gene expression between male and female mammals. The research -- published this week in the journal Science -- could explain differences in disease risk for males and females. Men are more likely to experience heart disease, for example, while women are more likely to be diagnosed with autoimmune disease.

Researchers determined that sex-biased gene expression accounts for 12 percent of the difference in average height between males and females.

"Discovering contributions of sex biased gene expression to height is exciting because identifying the determinants of height is a classic, century-old problem, and yet by looking at sex differences in this new way we were able to provide new insights," David Page, director of the Whitehead Institute at MIT, said in a news release. "My hope is that we and other researchers can repeat this model to similarly gain new insights into diseases that show sex bias."

If a gene is sex-biased, the same gene can be inherited by a son and daughter, but could be expressed differently in each child. The sex-biased genes identified in humans were not always the same genes found to be sex-biased in different animal species. The discovery has implications for medical research that relies on animal models to study human diseases.

Scientists did identify some genes that appear to have evolved the sex bias in an early mammalian ancestor and maintained that bias across millions of years of evolution. But the majority of sex-biased genes became so only recently and are unique to a single species or lineage, like rodents or primates.

"We're not saying to avoid animal models in sex differences research, only not to take for granted that the sex biased gene expression behind a trait or disease observed in an animal will be the same as that in humans," said Sahin Naqvi, former MIT graduate student, now a postdoctoral researcher at Stanford. "Now that researchers have species and tissue-specific data available to them, we hope they will use it to inform their interpretation of results from animal models."

Researchers are now working to understand the biochemical mechanisms that enable sex-biased gene expression. Early tests suggests sex-biased transcription factors play an important role in controlling the expression of sex-biased genes.

"We're beginning to build the infrastructure for a systematic understanding of sex biases throughout the body," Page said. "We hope these data sets are used for further research, and we hope this work gives people a greater appreciation of the need for, and value of, research into the molecular differences in male and female biology."

Unlike reptiles and birds, which scarf down large chunks of food or even swallow prey whole, most mammals chew before they swallow. The discovery of the 165-million-year-old remains of a shrew-like animal, Microdocodon gracilis, suggests some of the earliest ancestors of modern mammals chewed before they swallowed, too.

The newly found Jurassic fossil features the earliest known example of the hyoid bones deployed by modern mammals. Hyoid bones connect the back of the mouth to the esophagus. In mammals, the bones are suspended by jointed segments from the skull to form a U-like shape. They provide the tongue and throat muscles with the mobility necessary to transport and swallow chewed food.

"Mammals have become so diverse today through the evolution of diverse ways to chew their food, weather it is insects, worms, meat, or plants. But no matter how differently mammals can chew, they all have to swallow in the same way," Zhe-Xi Luo, a professor of biology and anatomy at the University of Chicago, said in a news release. "Essentially, the specialized way for mammals to chew and then swallow is all made possible by the agile hyoid bones at the back of the throat."

While other vertebrates have hyoid bones, they are simple and rod-like. The same kinds of sophisticated chewing technique used be mammals would be impossible with such a rigid structure supporting the tongue and throat.

Until now, scientists were unsure of the evolutionary origins of U-shaped hyoid bones. The latest discovery, detailed this week in the journal Science, suggests Microdocodon gracilis was one of the earliest species to deploy the evolutionary adaptation.

"It is a pristine, beautiful fossil. I was amazed by the exquisite preservation of this tiny fossil at the first sight. We got a sense that it was unusual, but we were puzzled about what was unusual about it," Luo said. "After taking detailed photographs and examining the fossil under a microscope, it dawned on us that this Jurassic animal has tiny hyoid bones much like those of modern mammals."

Microdocodon gracilis is a docodont, an extinct lineage of mammaliaforms, which is a group of early mammalian ancestors from the Mesozoic era. Scientists used CT scans, computer simulations and 3D casts of the fossil to better understand both its ecological and evolutionary history.

Though the species boasts a middle ear bone still attached to the jaw, a primitive feature, its hyoids already resembled those of modern mammals.

"Hyoids and ear bones are all derivatives of the primordial vertebrate mouth and gill skeleton, with which our earliest fishlike ancestors fed and respired," said Bhart-Anjan Bhullar, a postdoctoral researcher at Yale University. "The jointed, mobile hyoid of Microdocodon coexists with an archaic middle ear -- still attached to the lower jaw. Therefore, the building of the modern mammal entailed serial repurposing of a truly ancient system."

The species' lightweight, long tail and nimble limb bones resemble those of a tree-dweller, while its teeth suggest M. gracilis ate mostly insects.

"Its limb bones are as thin as matchsticks, and yet this tiny Mesozoic mammal still lived an active life in trees," said April Neander, a scientific artist at the University of Chicago.


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EARLY EARTH
Scientists develop new method for studying early life in ancient rocks
Edmonton, Canada (SPX) Jul 09, 2019
Scientists have developed a new method for detecting traces of primordial life in ancient rock formations using potassium. The method relies on searching for high concentrations of potassium in ancient sedimentary rocks, rather than traditional methods that look for carbon, sulfur, or nitrogen - which can appear in ancient rocks through processes unrelated to ancient life. "Our findings show that microbial biofilms trapped potassium from ancient seawater and facilitated its accumulation into ... read more

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